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Add dictionaries, materials.

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This commit is contained in:
Daniel Kraus
2015-06-28 09:44:33 +02:00
parent 24c58a5867
commit 39f63835be
12 changed files with 501 additions and 58 deletions
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122
zaaReloaded2/Defaults/parameters.txt
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@@ -1,5 +1,117 @@
# LAURIS-NAME "KANONISCHER NAME" KATEGORIE "IMMER REFERENZBEREICH"
# =========== ================== ========= =======================
"Lactat Dehydrogenase" LDH Klinische Chemie
"Cystatin C" --- Nierenfunktion X
"glomerul. Filtrationsr. CKD-EP" "eGFR (CKD-EPI)" Nierenfunktion
# LAURIS-NAME "KANONISCHER NAME" MATERIAL "IMMER REFERENZBEREICH"
# =========== ================== ======== =======================
"Lactat Dehydrogenase" LDH S
"Cystatin C" --- S X
"glomerul. Filtrationsr. CKD-EP" "eGFR (CKD-EPI)" S
Übergangsepithelien (U) --- U
a1-Microglobulin (SU) --- SU
a1-Microglobulin (SU)/die --- SU
aktuelles Bicarbonat --- BGA
Albumin (PU) --- U
Albumin (SU) --- SU
Albumin (SU)/die --- SU
Albumin --- S
Albumin/Creatinin (PU) --- U
Alk. Phosphatase --- S
Amylase --- S
anorg. Phosphat --- S
Bakterien (U) --- U
Basenabweichung --- BGA
Basophile --- E
Bilirubin (U) --- U
C-reaktives Protein --- S
Calcium (SU) --- SU
Calcium (SU)/die --- SU
Calcium --- S
Calcium-Phosphat-Produkt --- S
Cholesterin --- S
CK gesamt --- S
CK MB --- S
Creatinin (PU) --- U
Creatinin (SU) --- SU
Creatinin --- S
Creatinin-Clearance (SU)/min --- SU
Cyclosporin-A vor Gabe --- S
Cystatin C (N Latex) --- S
Eisen --- S
Eosinophile --- E
Erythrozyten (U) --- U
Erythrozyten --- E
Ferritin --- S
Gesamt-Bilirubin --- S
Gesamt-Eiweiss (PU) --- U
Gesamt-Eiweiss (SU) --- SU
Gesamt-Eiweiss (SU)/die --- SU
Gesamt-Eiweiss --- S
Gesamt-Eiweiss/Creatinin (PU) --- U
GGT --- S
glomeruläre Filtrationsrate --- SU
glomerul. Filtrationsr. (MDRD) --- S
glomerul. Filtrationsr. CKD-EP --- S
Glucose (U) --- U
Glucose --- S
GOT (ASAT) --- S
GPT (ALAT) --- S
Hämatokrit --- E
Hämoglobin --- E
Haptoglobin --- S
Harnsäure --- S
Harnstoff (SU) --- SU
Harnstoff (SU)/die --- SU
Harnstoff --- S
Harnstoff-Clearance (SU)/min --- SU
HbA1c (NGSP) --- E
HDL - Cholesterin --- S
hyaline Zylinder (U) --- U
Kalium (SU) --- U
Kalium (SU)/die --- SU
Kalium --- S
Ketonkörper (U) --- U
Lactat Dehydrogenase --- S
LDL - Cholesterin --- S
Leukozyten (U) --- U
Leukozyten --- E
Lymphozyten --- E
MCH (HbE) --- E
MCHC --- E
MCV --- E
Mittleres Plättchenvolumen --- E
Monozyten --- E
Natrium (SU) --- SU
Natrium (SU)/die --- SU
Natrium --- S
Neutrophile --- E
Nitrit (U) --- U
NT-proBNP --- S
PCO2 (art.) --- BGA
pH (U) --- U
pH --- BGA
Plattenepithelien (U) --- U
PO2 (art.) --- BGA
Protein (U) --- U
Sammelmenge (U) --- SU
Sammelzeit (U) --- SU
Sauerstoffsättigung (art.) --- BGA
Sirolimus --- S
spezifisches Gewicht (U) --- U
Standard Bicarbonat --- BGA
Tacrolimus (FK506) --- S
Thrombozyten --- E
Transferrin --- S
Transferrinsättigung --- S
Triglyceride --- S
Troponin T (high sensitive) --- S
Unreife Granulozyten --- E
Urobilinogen (U) --- U
Niedermol. Heparin (Anti-Xa) --- Z
Thromboplastinzeit n. Quick --- Z
PTT --- Z
Ratio int. norm. --- Z
Komplementfaktor C3c --- S
Komplementfaktor C4 --- S
Anti-DNAse B --- S
Anti-Streptolysin --- S
PTH intakt --- S
TSH --- S
HAPTOGLOBIN --- S
FRAGMENTOZYTEN --- E

5
zaaReloaded2/Defaults/units.txt
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@@ -1,3 +1,6 @@
# LAURIS-EINHEIT "KANONISCHE EINHEIT"
# ============== ====================
"ml/min/ 1,73qm" "ml/min/1,73 m²"
# WICHTIG: Nur direkt austauschbare Einheiten verwenden,
# weil (bislang) keine Umrechnung der Werte vorgesehen ist!
"ml/min/ 1,73qm" "ml/min/1,73 m²"
ng/ml µg/l

145
zaaReloaded2/Dictionaries/DictionaryBase.cs
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@@ -20,6 +20,7 @@ using System.Collections.Generic;
using System.IO;
using System.Linq;
using System.Text;
using System.Text.RegularExpressions;
namespace zaaReloaded2.Dictionaries
{
@@ -32,16 +33,42 @@ namespace zaaReloaded2.Dictionaries
{
#region Public properties
/// <summary>
/// Gets a sorted dictionary of records. The records are sorted by the
/// first field, and each record contains the entire set of fields,
/// including the first field.
/// </summary>
public SortedDictionary<string, string[]> Records { get; protected set; }
#endregion
#region Constructor
/// <summary>
/// Constructs a new dictionary, loading default data from a built-in
/// resource, and user data from a custom file.
/// </summary>
public DictionaryBase()
{
Records = new SortedDictionary<string, string[]>();
LoadDefaultValues();
LoadUserValues();
}
#endregion
#region Public methods
/// <summary>
/// Returns true if the dictionary contains a record for
/// <paramref name="key"/>.
/// </summary>
/// <param name="key">Dictionary key to look up.</param>
/// <returns>True if a record for <paramref name="key"/>
/// exist, false if not.</returns>
public bool HasRecord(string key)
{
return Records.ContainsKey(key);
}
#endregion
@@ -53,6 +80,13 @@ namespace zaaReloaded2.Dictionaries
/// </summary>
abstract protected Stream GetDefaultStream();
/// <summary>
/// Returns the file name of the text file that contains user-defined
/// values.
/// </summary>
/// <returns>File name.</returns>
abstract protected string GetUserFileName();
#endregion
#region Protected methods
@@ -96,19 +130,120 @@ namespace zaaReloaded2.Dictionaries
ReadFile(sr);
}
#endregion
#region Private methods
/// <summary>
/// Loads default dictionary values from a text file that is built
/// into the assembly as an embbedded resource.
/// </summary>
private void LoadDefaultValues()
protected virtual void LoadDefaultValues()
{
ReadFile(GetDefaultStream());
}
/// <summary>
/// Attempts to load additional values from a user file whose path
/// is provided by <see cref="GetUserFileName()"/>.
/// </summary>
protected virtual void LoadUserValues()
{
try
{
FileStream fs = new FileStream(GetUserFileName(), FileMode.Open, FileAccess.Read);
ReadFile(fs);
}
catch { }
}
/// <summary>
/// Looks up a dictionary key and returns the value from the requested field,
/// or a default value if the field is empty or contains only dashes.
/// </summary>
/// <param name="key">Key to look up.</param>
/// <param name="fieldNum">Zero-based index of the field to look up
/// (note that field 0 is the key itself).</param>
/// <param name="defaultValue">Default value that will be returned
/// if the field is empty or contains only dashes.</param>
/// <returns>Value of the requested field, or <paramref name="defaultValue"/>
/// if the field is empty or contains only dashes.</returns>
/// <exception cref="System.IndexOutOfRangeException">if fieldNum is negative.</exception>
protected string LookUpValue(string key, int fieldNum, string defaultValue)
{
string[] record;
if (Records.TryGetValue(key, out record))
{
if (fieldNum >= record.Length) return defaultValue;
string value = record[fieldNum];
if (string.IsNullOrWhiteSpace(value) || _dashes.IsMatch(value))
{
return defaultValue;
}
else
{
return value;
}
}
else
{
return defaultValue;
}
}
/// <summary>
/// Looks up a dictionary key and returns the value from the requested field,
/// or an empty string if the field is empty or contains only dashes.
/// </summary>
/// <param name="key">Key to look up.</param>
/// <param name="fieldNum">Zero-based index of the field to look up
/// (note that field 0 is the key itself).</param>
/// <returns>Value of the requested field, or <see cref="String.Empty"/>
/// if the field is empty or contains only dashes.</returns>
/// <exception cref="System.IndexOutOfRangeException">if fieldNum is negative.</exception>
protected string LookUpValue(string key, int fieldNum)
{
return LookUpValue(key, fieldNum, String.Empty);
}
/// <summary>
/// Looks up a dictionary key and returns a boolean value from the requested field,
/// or a default value if the field is empty or contains only dashes.
/// </summary>
/// <remarks>
/// The following case-insensitive text values are evaluated as "true": X, Y, J, +,
/// 1, JA, TRUE, WAHR.
/// </remarks>
/// <param name="key">Key to look up.</param>
/// <param name="fieldNum">Zero-based index of the field to look up
/// (note that field 0 is the key itself).</param>
/// <param name="defaultValue">Default value that will be returned
/// if the field is empty or contains only dashes.</param>
/// <returns>Value of the requested field, or <paramref name="defaultValue"/>
/// if the field is empty or contains only dashes.</returns>
/// <exception cref="System.IndexOutOfRangeException">if fieldNum is negative.</exception>
protected bool LookUpValue(string key, int fieldNum, bool defaultValue)
{
string textValue = LookUpValue(key, fieldNum, String.Empty);
switch (textValue.ToUpper())
{
case "X":
case "Y":
case "J":
case "+":
case "1":
case "JA":
case "YES":
case "TRUE":
case "WAHR":
return true;
default:
return defaultValue;
}
}
#endregion
#region Fields
private static readonly Regex _dashes = new Regex("-+");
#endregion
}
}

69
zaaReloaded2/Dictionaries/ParameterDictionary.cs
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@@ -20,6 +20,8 @@ using System.Collections.Generic;
using System.Linq;
using System.Reflection;
using System.Text;
using System.IO;
using zaaReloaded2.Models;
namespace zaaReloaded2.Dictionaries
{
@@ -30,9 +32,74 @@ namespace zaaReloaded2.Dictionaries
/// </summary>
class ParameterDictionary : DictionaryBase
{
#region Public methods
/// <summary>
/// Looks up the canonical name for a given <paramref name="laurisName"/>.
/// </summary>
/// <param name="laurisName">Lauris item name to look up.</param>
/// <returns>Canonical name, or original Lauris name if no canonical name
/// is defined for this item.</returns>
public string GetCanonicalName(string laurisName)
{
return LookUpValue(laurisName, 1, laurisName);
}
/// <summary>
/// Looks up the material for a given <paramref name="laurisName"/>.
/// </summary>
/// <param name="laurisName">Lauris item name to look up.</param>
/// <returns><see cref="zaaReloaded2.Models.Materials"/> enum; if no material is
/// found in the dictionary, the default material "S" (serum) is returned.</returns>
public Materials GetMaterial(string laurisName)
{
string textValue = LookUpValue(laurisName, 2);
try
{
Materials m = (Materials)Enum.Parse(typeof(Materials), textValue, true);
return m;
}
catch
{
return Materials.S;
}
}
/// <summary>
/// Returns whether or not reference limits shall always
/// be displayed for a given item, regardless whether it
/// is normal or not.
/// </summary>
/// <param name="key">Laboratory item to look up; this must
/// be an original Lauris string.</param>
/// <returns></returns>
public bool GetForceReferenceDisplay(string laurisName)
{
return LookUpValue(laurisName, 3, false);
}
#endregion
#region Overrides
/// <summary>
/// Returns the resource stream for Defaults\parameters.txt.
/// </summary>
protected override System.IO.Stream GetDefaultStream()
{
return Assembly.GetExecutingAssembly().GetManifestResourceStream("");
return Assembly.GetExecutingAssembly().GetManifestResourceStream(
"zaaReloaded2.Defaults.parameters.txt");
}
/// <summary>
/// Returns a path to a file parameters.txt in the addin directory
/// as provided by <see cref="ThisAddin.Subdir"/>.
/// </summary>
protected override string GetUserFileName()
{
return Path.Combine(ThisAddIn.Subdir, "parameters.txt");
}
#endregion
}
}

38
zaaReloaded2/Dictionaries/UnitDictionary.cs
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@@ -19,6 +19,8 @@ using System;
using System.Collections.Generic;
using System.Linq;
using System.Text;
using System.IO;
using System.Reflection;
namespace zaaReloaded2.Dictionaries
{
@@ -28,9 +30,43 @@ namespace zaaReloaded2.Dictionaries
/// </summary>
class UnitDictionary : DictionaryBase
{
#region Public methods
/// <summary>
/// Translates a Lauris unit into a zaaReloaded2 canonical unit.
/// If there is no canonical unit, this function returns the
/// Lauris unit as-is.
/// </summary>
/// <param name="laurisUnit">Lauris unit to translate.</param>
/// <returns>Canonical unit, or Lauris unit if no canonical
/// unit was found.</returns>
public string TranslateLaurisUnit(string laurisUnit)
{
return LookUpValue(laurisUnit, 1, laurisUnit);
}
#endregion
#region Overrides
/// <summary>
/// Returns the resource stream for Defaults\parameters.txt.
/// </summary>
protected override System.IO.Stream GetDefaultStream()
{
throw new NotImplementedException();
return Assembly.GetExecutingAssembly().GetManifestResourceStream(
"zaaReloaded2.Defaults.units.txt");
}
/// <summary>
/// Returns a path to a file parameters.txt in the addin directory
/// as provided by <see cref="ThisAddin.Subdir"/>.
/// </summary>
protected override string GetUserFileName()
{
return Path.Combine(ThisAddIn.Subdir, "units.txt");
}
#endregion
}
}

38
zaaReloaded2/Models/LabItem.cs
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@@ -170,20 +170,11 @@ namespace zaaReloaded2.Models
/// The canonical name of this item, or the Lauris <see cref="Name"/>
/// of the item if no canonical name is known.
/// </summary>
public string CanonicalName
{
get
{
if (!string.IsNullOrEmpty(_canonicalName))
{
return _canonicalName;
}
else
{
return Name;
}
}
}
public string CanonicalName { get; private set; }
public bool AlwaysPrintLimits { get; private set; }
public Materials Material { get; private set; }
#endregion
@@ -205,6 +196,24 @@ namespace zaaReloaded2.Models
ParseLauris();
}
/// <summary>
/// Creates a LabItem object from a given Lauris output, using
/// a <see cref="ParameterDictionary"/> too look up additional
/// properties (canonical name, material type, whether or not
/// to always print the reference interval).
/// </summary>
/// <param name="laurisString">Lauris output to parse.</param>
/// <param name="dictionary">ParameterDictionary that is used
/// to look up the canonical name, material type, and whether or
/// not to always print the reference interval</param>
public LabItem(string laurisString, Dictionaries.ParameterDictionary dictionary)
: this(laurisString)
{
CanonicalName = dictionary.GetCanonicalName(Name);
AlwaysPrintLimits = dictionary.GetForceReferenceDisplay(Name);
Material = dictionary.GetMaterial(Name);
}
#endregion
#region Private methods
@@ -289,7 +298,6 @@ namespace zaaReloaded2.Models
#region Fields
string _canonicalName;
double _numericalValue;
double _lowerLimit;
double _upperLimit;

59
zaaReloaded2/Models/Materials.cs Executable file
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@@ -0,0 +1,59 @@
/* Materials.cs
* part of zaaReloaded2
*
* Copyright 2015 Daniel Kraus
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
using System;
using System.Collections.Generic;
using System.ComponentModel;
using System.Linq;
using System.Text;
namespace zaaReloaded2.Models
{
/// <summary>
/// Enumerates the known materials.
/// </summary>
enum Materials
{
[Description("Serum")]
/// Serum
S,
[Description("Plasma")]
/// Plasma
P,
[Description("EDTA-Blut")]
/// EDTA-Blut
E,
[Description("BGA")]
/// BGA
BGA,
[Description("Zitrat")]
/// Zitrat-Blut
Z,
[Description("Laktat")]
/// Laktat-Blut
L,
[Description("Urin")]
/// Urin (Spoturin)
U,
[Description("Sammelurin")]
/// Sammelurin
SU,
[Description("Sondermaterial")]
/// Sondermaterial
X
}
}

14
zaaReloaded2/ThisAddIn.cs
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@@ -20,6 +20,7 @@ using System.Collections.Generic;
using System.Linq;
using System.Text;
using System.Xml.Linq;
using System.IO;
using Word = Microsoft.Office.Interop.Word;
using Office = Microsoft.Office.Core;
using Microsoft.Office.Tools.Word;
@@ -28,6 +29,19 @@ namespace zaaReloaded2
{
public partial class ThisAddIn
{
/// <summary>
/// Gets the subdirectory for addin data in the user profile directory.
/// </summary>
public static string Subdir
{
get
{
return Path.Combine(
Environment.GetFolderPath(Environment.SpecialFolder.UserProfile),
"zaaReloaded2");
}
}
private void ThisAddIn_Startup(object sender, System.EventArgs e)
{
}

1
zaaReloaded2/zaaReloaded2.csproj
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@@ -165,6 +165,7 @@
<Compile Include="Dictionaries\ParameterDictionary.cs" />
<Compile Include="Dictionaries\UnitDictionary.cs" />
<Compile Include="Models\LabItem.cs" />
<Compile Include="Models\Materials.cs" />
<Compile Include="Properties\AssemblyInfo.cs">
<SubType>Code</SubType>
</Compile>