zaaReloaded2/zaaReloaded2/Importer/ZaaImporter/LaurisTimePoint.cs

/* LaurisTimePoint.cs
 * part of zaaReloaded2
 * 
 * Copyright 2015-2017 Daniel Kraus
 * 
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 * 
 *     http://www.apache.org/licenses/LICENSE-2.0
 * 
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */
using System;
using System.Collections.Generic;
using System.Diagnostics;
using System.Globalization;
using System.Linq;
using System.Text;
using System.Text.RegularExpressions;
using zaaReloaded2.Thesaurus;
using zaaReloaded2.LabModel;

namespace zaaReloaded2.Importer.ZaaImporter
{
    /// <summary>
    /// Holds all laboratory items for a given time point.
    /// </summary>
    class LaurisTimePoint : TimePoint
    {
        #region Static methods

        /// <summary>
        /// Examines a string and returns true if it resembles
        /// a time stamp line in the Lauris output.
        /// </summary>
        /// <param name="line">Line to examine.</param>
        /// <returns>True if line resembles a time stamp line
        /// in the Lauris output.</returns>
        static public bool IsTimeStampLine(string line)
        {
            return _timeStampRegex.IsMatch(line);
        }

        /// <summary>
        /// Gets a Regex object that matches a Lauris time stamp
        /// line.
        /// </summary>
        static public Regex TimeStampRegex
        {
            get
            {
                return _timeStampRegex;
            }
        }

        #endregion

        #region Properties

        /// <summary>
        /// Gets an array of paragraphs in this LaurisText.
        /// </summary>
        public IList<String> Paragraphs
        {
            [DebuggerStepThrough]
            get
            {
                if (_paragraphs == null)
                {
                    _paragraphs = new List<String>();
                }
                return _paragraphs;
            }
            set
            {
                _paragraphs = value;
                ParseParagraphs();
            }
        }

        /// <summary>
        /// Is true if the LaurisText has time stamp in the first
        /// paragraph and <see cref="LabItem"/>s in the others.
        /// </summary>
        public bool IsValidTimePoint
        {
            get
            {
                return Items.Count > 0;
            }
        }

        /// <summary>
        /// Gets or sets the original Lauris text for this timepoint.
        /// </summary>
        public string LaurisText
        {
            [DebuggerStepThrough]
            get
            {
                return String.Join(Environment.NewLine, Paragraphs);
            }
            set
            {
                if (!String.IsNullOrEmpty(value))
                {
                    Paragraphs = value.Split(
                        new string[] { Environment.NewLine },
                        StringSplitOptions.None).ToList();
                }
            }
        }

        #endregion

        #region Constructors

        public LaurisTimePoint() { }

        public LaurisTimePoint(
            string laurisText,
            Parameters parameterDictionary,
            Units unitDictionary)
            : this()
        {
            _parameterDictionary = parameterDictionary;
            _unitDictionary = unitDictionary;
            LaurisText = laurisText;
        }

        public LaurisTimePoint(string laurisText)
            : this(laurisText, null, null)
        { }

        public LaurisTimePoint(
            IList<String> paragraphs,
            Parameters parameterDictionary,
            Units unitDictionary)
            : this(parameterDictionary, unitDictionary)
        {
            Paragraphs = paragraphs;
        }

        public LaurisTimePoint(IList<String> paragraphs)
            : this(paragraphs, null, null)
        {
        }

        public LaurisTimePoint(
                Parameters parameterDictionary,
                Units unitDictionary)
            : this()
        {
            _parameterDictionary = parameterDictionary;
            _unitDictionary = unitDictionary;
        }

        #endregion

        #region Public methods

        /// <summary>
        /// Adds a new paragraph to this time point by parsing
        /// the paragraph for laboratory items.
        /// </summary>
        /// <param name="paragraph">Paragraph to add.</param>
        public void AddParagraph(string paragraph)
        {
            Paragraphs.Add(paragraph);
            ParseParagraph(paragraph);
        }

        #endregion

        #region Private methods

        /// <summary>
        /// Analyzes each Lauris paragraph in this time point, sets the date
        /// and time, and collects LabItem data.
        /// </summary>
        void ParseParagraphs()
        {
            if (Paragraphs != null)
            {
                foreach (string paragraph in Paragraphs)
                {
                    ParseParagraph(paragraph);
                }
            }
        }

        void ParseParagraph(string paragraph)
        {
            Match m = _timeStampRegex.Match(paragraph);
            if (m.Success)
            {
                Logger.Info("ParseParagraph: Matches time stamp");
                DateTime dt;
                if (DateTime.TryParseExact(
                    m.Groups["datetime"].Value,
                    "dd.MM.yyyy HH:mm",
                    CultureInfo.InvariantCulture,
                    DateTimeStyles.AllowWhiteSpaces,
                    out dt))
                {
                    TimeStamp = dt;
                }

                // Put the remainder of the line back to the
                // 'paragraph' parameter to deal with exceptional
                // lines such as 
                // "(17.09.2015-201710:44:00) Cyclosporin-A vor Gabe: 130 µg/l;"
                // We need to add a dummy caption because this is
                // the normal format of a paragraph generated from Lauris.
                if (m.Groups["tail"].Success)
                {
                    Logger.Info("ParseParagraph: Time stamp has a tail -- putting it back with a dummy caption");
                    paragraph = "DUMMY CAPTION: " + m.Groups["tail"].Value;
                }
                else
                {
                    paragraph = null;
                }
            }

            if (!String.IsNullOrEmpty(paragraph))
            {
                Logger.Info("ParseParagraph: Not a time stamp");
                LaurisParagraph lp = new LaurisParagraph(
                        paragraph,
                        _parameterDictionary,
                        _unitDictionary);
                if (lp.IsLaurisParagraph)
                {
                    Logger.Debug("ParseParagraph: Merging Lauris paragraph");
                    Items.Merge(lp.Items);
                }
            }
        }

        void AddItems(IItemDictionary items)
        {
            Items.Merge(items);
        }

        #endregion

        #region Private fields

        /// <summary>
        /// A regular expression that matches the time stamp in the first
        /// paragraph of a LaurisText.
        /// </summary>
        static readonly Regex _timeStampRegex = new Regex(
            @"^(Labor:?)?\s*\(?\s*(?<datetime>\d\d\.\d\d\.\d\d\d\d\s+\d\d:\d\d)(:00\)\s*(?<tail>.+)?)?$");
        IList<String> _paragraphs;
        Parameters _parameterDictionary;
        Units _unitDictionary;

        #endregion

        #region Class logger

        private static NLog.Logger Logger { get { return _logger.Value; } }

        private static readonly Lazy<NLog.Logger> _logger = new Lazy<NLog.Logger>(() => NLog.LogManager.GetCurrentClassLogger());

        #endregion
    }
}